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Install
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Install Harpy
- conda or ⚡mamba⚡
- we strongly recommend you use mamba
- if using conda, replace
mamba
withconda
in the instructions below
Harpy is hosted on Bioconda! That means to install it, you just need to have mamba
(or conda
) on your Linux-based
system and install it with a simple command. You can install Harpy into an existing environment or create a new one for it (recommended).
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install into a new environment
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✨recommended✨
The code snippet below creates a new environment called harpy
(the -n harpy
part) and installs harpy into it from the bioconda channel (-c bioconda
part). You can name this
environment anything (e.g. haplotagging
, jeanclaudevandamme
, etc.).
mamba create -n harpy -c bioconda -c conda-forge harpy
Once conda finishes the install, you can activate the environment (with whatever -n <env_name>
you gave it) and harpy
will be callable
from the command line.
mamba activate <env_name>
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install into an existing evironment
If you want to install harpy into an existing environment, then with an environment already activated (via mamba activate <env_name>
) simply use the mamba install
command and harpy
will be callable from the command line.
mamba install -c bioconda -c conda-forge harpy
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Update Harpy
If you want to update Harpy, the process is quite similar:
mamba activate <env_name>
mamba update -c conda-forge bioconda::harpy