# View

This convenience command lets you view relevant details within a Harpy workflow directory without having to fish around for the right files.

usage
harpy view MODE DIRECTORY

example | view the workflow configuration of an existing harpy-generated folder
harpy view config Align/bwa

# arguments

argument	description
`DIRECTORY`	required Output directory of an existing harpy workflow

# modes

MODE	description
`config`	View a workflow's config file
`environments`*	View the conda environments and their software in `.environments`
`log`	View a workflow's last log file
`snakefile`	View a workflow's snakefile
`snakeparams`	View a workflow's snakemake parameter file

# environments

view environments is an exception in that it does not require a DIRECTORY argument. To use environments, you can run it without arguments or give it a SOFTWARE argument to only print environments where SOFTWARE is found (it also works with partial matches).

viewing all environments
harpy view environments

.environments/f5cb053d77e72fca1c7b6463448fd855_
  - falco=1.2.4
  - fastp
  - multiqc=1.28
  - pysam=0.22
  - quickdeconvolution

.environments/9f9995de2cc77c81654693b8fb002922_
  - quarto
  - r-dt
  - r-dplyr
  - r-highcharter
  - r-magrittr
  - r-plotly
  - r-scales
  - r-tidyr
  - r-viridislite
  - r-xml2
  - r-biocircos

searching for a program
harpy view environments fast

.environments/f5cb053d77e72fca1c7b6463448fd855_
  - falco=1.2.4
  → fastp
  - multiqc=1.28
  - pysam=0.22
  - quickdeconvolution