# Category: guides

A gentle introduction to the wild world of filtering SNPs

A realistic workflow to simulate variants

Sorting data by linked-read barcode

As of Harpy v3, the program will auto-detect that your input FASTQ or BAM files are not linked-read data. This can also be forced with --unlinked / -U. You can safely ignore the linked-read information in some of the reports Harpy produces.

Deciding between using Conda or Containers

Why pool samples for SV calling and when to do it