Installing Djinn

conda recommended

Djinn can be installed with conda/mamba:

conda install -c bioconda -c conda-forge bioconda::djinn

pixi recommended

If you have an existing pixi environment configured with the bioconda channel:

pixi add djinn

If you don't have a pixi environment in your project directory:

pixi init -c conda-forge -c bioconda
pixi add djinn

pip

Alternatively, if conda isn't available on your system, you can install the python package manually. You will also need to make sure samtools is installed on your system.

1. get the latest release

This example uses version 2.0, but the version you want may differ

DJINN_VERSION="2.0"
https://github.com/pdimens/djinn/releases/download/${DJINN_VERSION}/djinn.${DJINN_VERSION}.tar.gz

2. decompress it

tar xvfz djinn.${DJINN_VERSION}.tar.gz
cd djinn.${DJINN_VERSION}

3. install with pip

python -m pip install .

python3 -m pip install --upgrade build && python3 -m build && \
    pip install dist/*.whl